Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0966Conserved hypothetical protein; Identified by similarity to GB:AAK27910.2. (117 aa)    
Predicted Functional Partners:
CPF_0965
Putative membrane protein; Identified by similarity to GB:AAL96783.1.
 
     0.945
CPF_0969
KID repeat family protein.
 
     0.864
CPF_0967
Conserved hypothetical protein; Identified by similarity to PIR:B97132.
       0.701
CPF_0964
Hypothetical protein; Identified by glimmer; putative.
       0.662
CPF_0948
Phage terminase, small subunit; Identified by similarity to GB:CAA47711.1; match to protein family HMM PF03592.
 
     0.652
CPF_0952
Putative phage minor capsid protein.
 
     0.617
CPF_0956
Putative phage major capsid protein; Identified by similarity to GB:AAA56848.1.
 
     0.588
CPF_0949
Putative phage terminase, large subunit.
 
     0.563
CPF_0968
Conserved hypothetical protein; Identified by similarity to PIR:A97132.
       0.558
CPF_0971
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
 
     0.528
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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