Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0970Conserved hypothetical protein; Identified by similarity to GB:AAL96787.1. (82 aa)    
Predicted Functional Partners:
CPF_0971
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
       0.741
CPF_0969
KID repeat family protein.
       0.718
CPF_0972
Conserved domain protein; Identified by similarity to GB:BAA29564.1.
       0.614
CPF_0968
Conserved hypothetical protein; Identified by similarity to PIR:A97132.
       0.610
CPF_0967
Conserved hypothetical protein; Identified by similarity to PIR:B97132.
       0.464
CPF_0973
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183; match to protein family HMM PF08239.
       0.443
CPF_0965
Putative membrane protein; Identified by similarity to GB:AAL96783.1.
       0.427
CPF_0966
Conserved hypothetical protein; Identified by similarity to GB:AAK27910.2.
       0.427
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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