STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0987Conserved hypothetical protein; Identified by similarity to GB:AAM86130.1. (97 aa)    
Predicted Functional Partners:
CPF_1073
Discoidin domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305.
  
     0.731
CPF_1489
F5/8 type C domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305.
  
     0.713
CPF_1226
Putative membrane protein.
  
     0.707
CPF_0796
Conserved hypothetical protein; Identified by similarity to SP:P28671.
  
     0.677
CPF_0456
Putative membrane protein.
  
     0.616
CPF_2827
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.592
CPF_0126
Identified by match to protein family HMM PF03595.
  
     0.521
CPF_0593
Conserved domain protein.
  
     0.514
CPF_2336
Putative membrane protein.
  
     0.496
CPF_2364
Conserved hypothetical protein; Identified by similarity to GB:AAO36386.1; match to protein family HMM PF07550.
 
     0.478
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.