fucU protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fucU

Fucose operon protein FucU; Identified by similarity to SP:P11555; match to protein family HMM PF05025; Belongs to the RbsD / FucU family. (145 aa)

Predicted Functional Partners:

fucK

0.962

fucI

0.959

fucA

0.814

fucP

0.629

CPF_1047

0.623

CPF_1961

0.511

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_1047	fucA	CPF_1047	CPF_1051	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	0.658
CPF_1047	fucI	CPF_1047	CPF_1048	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.767
CPF_1047	fucK	CPF_1047	CPF_1049	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	L-fuculokinase; Identified by match to protein family HMM PF00370.	0.796
CPF_1047	fucP	CPF_1047	CPF_1052	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	L-fucose:H+ symporter permease; Identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885.	0.469
CPF_1047	fucU	CPF_1047	CPF_1050	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Fucose operon protein FucU; Identified by similarity to SP:P11555; match to protein family HMM PF05025; Belongs to the RbsD / FucU family.	0.623
CPF_1961	fucU	CPF_1961	CPF_1050	GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Fucose operon protein FucU; Identified by similarity to SP:P11555; match to protein family HMM PF05025; Belongs to the RbsD / FucU family.	0.511
fucA	CPF_1047	CPF_1051	CPF_1047	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.658
fucA	fucI	CPF_1051	CPF_1048	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.870
fucA	fucK	CPF_1051	CPF_1049	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	L-fuculokinase; Identified by match to protein family HMM PF00370.	0.951
fucA	fucP	CPF_1051	CPF_1052	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	L-fucose:H+ symporter permease; Identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885.	0.746
fucA	fucU	CPF_1051	CPF_1050	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	Fucose operon protein FucU; Identified by similarity to SP:P11555; match to protein family HMM PF05025; Belongs to the RbsD / FucU family.	0.814
fucI	CPF_1047	CPF_1048	CPF_1047	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.767
fucI	fucA	CPF_1048	CPF_1051	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	0.870
fucI	fucK	CPF_1048	CPF_1049	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	L-fuculokinase; Identified by match to protein family HMM PF00370.	0.980
fucI	fucP	CPF_1048	CPF_1052	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	L-fucose:H+ symporter permease; Identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885.	0.749
fucI	fucU	CPF_1048	CPF_1050	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	Fucose operon protein FucU; Identified by similarity to SP:P11555; match to protein family HMM PF05025; Belongs to the RbsD / FucU family.	0.959
fucK	CPF_1047	CPF_1049	CPF_1047	L-fuculokinase; Identified by match to protein family HMM PF00370.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.796
fucK	fucA	CPF_1049	CPF_1051	L-fuculokinase; Identified by match to protein family HMM PF00370.	L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.	0.951
fucK	fucI	CPF_1049	CPF_1048	L-fuculokinase; Identified by match to protein family HMM PF00370.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.980
fucK	fucP	CPF_1049	CPF_1052	L-fuculokinase; Identified by match to protein family HMM PF00370.	L-fucose:H+ symporter permease; Identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885.	0.652

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Co-occurrence

Experiments

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About