Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_1073Discoidin domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305. (2142 aa)    
Predicted Functional Partners:
CPF_0796
Conserved hypothetical protein; Identified by similarity to SP:P28671.
  
     0.762
CPF_0987
Conserved hypothetical protein; Identified by similarity to GB:AAM86130.1.
  
     0.731
CPF_0540
Conserved hypothetical protein; Identified by similarity to GB:AAO35222.1.
  
     0.693
CPF_1226
Putative membrane protein.
  
     0.670
CPF_0210
Cell wall anchor domain protein; Identified by match to protein family HMM PF05031; match to protein family HMM TIGR01167.
  
     0.664
CPF_0456
Putative membrane protein.
  
     0.649
CPF_0593
Conserved domain protein.
  
     0.644
CPF_2336
Putative membrane protein.
  
     0.642
CPF_1454
Identified by match to protein family HMM PF03734.
  
     0.549
CPF_1228
Conserved hypothetical protein; Identified by similarity to GB:AAU19924.1.
  
     0.526
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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