Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1081Identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797. (447 aa)    
Predicted Functional Partners:
CPF_1082
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
    0.791
CPF_0330
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
     0.560
CPF_2828
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
     0.543
CPF_0857
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
     0.514
CPF_1029
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
    0.441
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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