Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1082Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (141 aa)    
Predicted Functional Partners:
CPF_1081
Identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797.
 
    0.791
CPF_1029
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.679
CPF_1083
Hypothetical protein; Identified by glimmer; putative.
       0.540
CPF_1084
Putative membrane protein.
       0.540
CPF_1085
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
     
 0.462
CPF_1028
Multidrug resistance protein; Identified by similarity to SP:P02982; match to protein family HMM PF07690.
  
   
 0.442
CPF_0538
Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
  
  
 0.432
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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