Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1096Putative membrane protein. (382 aa)    
Predicted Functional Partners:
CPF_1094
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.931
CPF_1092
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.870
CPF_1093
Putative membrane protein.
       0.751
CPF_1095
Putative membrane protein.
      
0.751
CPF_1698
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.569
CPF_1559
Putative adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.553
CPF_0072
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.530
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
     0.488
spoIIIAF
Stage III sporulation protein AF; Identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896.
  
     0.487
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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