STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1111Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165. (506 aa)    
Predicted Functional Partners:
CPF_1112
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF06580.
 
 
 0.992
CPF_2345
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580.
 
 
 0.965
CPF_0554
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580.
 
 
 0.962
CPF_2344
DNA-binding response regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
  
  
 
0.926
CPF_1113
Sugar ABC transporter, sugar-binding protein; Identified by match to protein family HMM PF01547.
 
  
 0.691
CPF_1171
Sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.
 
    0.549
CPF_2811
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
     0.500
CPF_2339
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
   
 0.499
CPF_2181
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.497
CPF_2338
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.486
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.