Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_1160Putative nitrite/sulfite reductase; Identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460. (238 aa)    
Predicted Functional Partners:
CPF_0728
Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992.
      0.902
CPF_1161
Hypothetical protein; Identified by glimmer; putative.
       0.682
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.668
CPF_1162
Conserved hypothetical protein; Identified by similarity to GB:AAS08237.1.
       0.646
noxA
Nitrate reductase, NADH oxidase subunit; Identified by similarity to GB:BAA74793.1; match to protein family HMM PF00070; match to protein family HMM PF07992.
     0.635
hemD
uroporphyrinogen-III methyltransferase/synthase; Identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.
 
     0.617
CPF_0526
Nitrite/sulfite reductase homolog; Identified by similarity to GB:BAA06530.1; match to protein family HMM PF01077; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
   
 0.494
CPF_1163
Conserved domain protein; Identified by similarity to GB:AAO35927.1.
       0.465
dedA
dedA protein; Identified by similarity to SP:P09548; match to protein family HMM PF09335.
       0.447
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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