CPF_1193 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_1193

Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005. (306 aa)

Predicted Functional Partners:

CPF_1194

0.910

hpkA

0.841

CPF_1192

0.648

ecfA1

0.461

CPF_1233

0.449

CPF_0704

0.427

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0704	CPF_1193	CPF_0704	CPF_1193	Putative lipoprotein; Identified by similarity to GB:CAD65063.1.	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	0.427
CPF_1192	CPF_1193	CPF_1192	CPF_1193	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	0.648
CPF_1192	CPF_1194	CPF_1192	CPF_1194	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333.	0.595
CPF_1192	hpkA	CPF_1192	CPF_1195	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.919
CPF_1193	CPF_0704	CPF_1193	CPF_0704	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	Putative lipoprotein; Identified by similarity to GB:CAD65063.1.	0.427
CPF_1193	CPF_1192	CPF_1193	CPF_1192	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.648
CPF_1193	CPF_1194	CPF_1193	CPF_1194	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333.	0.910
CPF_1193	CPF_1233	CPF_1193	CPF_1233	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	Putative tetracycline resistance protein; Identified by similarity to SP:Q46306; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231.	0.449
CPF_1193	ecfA1	CPF_1193	CPF_2683	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.461
CPF_1193	hpkA	CPF_1193	CPF_1195	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.841
CPF_1194	CPF_1192	CPF_1194	CPF_1192	Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.595
CPF_1194	CPF_1193	CPF_1194	CPF_1193	Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333.	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	0.910
CPF_1194	hpkA	CPF_1194	CPF_1195	Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.815
CPF_1233	CPF_1193	CPF_1233	CPF_1193	Putative tetracycline resistance protein; Identified by similarity to SP:Q46306; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231.	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	0.449
ecfA1	CPF_1193	CPF_2683	CPF_1193	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	0.461
hpkA	CPF_1192	CPF_1195	CPF_1192	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.919
hpkA	CPF_1193	CPF_1195	CPF_1193	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.	0.841
hpkA	CPF_1194	CPF_1195	CPF_1194	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333.	0.815

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About