STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1194Putative bacitracin ABC transporter, permease protein; Identified by similarity to SP:P42333. (250 aa)    
Predicted Functional Partners:
CPF_1193
Bacitracin ABC transporter, ATP-binding protein; Identified by similarity to SP:P42332; match to protein family HMM PF00005.
  
 
 0.934
hpkA
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.808
CPF_2288
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.660
CPF_0302
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.656
CPF_0446
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.656
CPF_0878
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.656
CPF_0954
Conserved hypothetical protein; Identified by similarity to GB:AAN67551.1.
  
 
 0.656
CPF_1094
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.656
CPF_1192
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.589
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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