Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1202Collagen triple helix repeat protein; Identified by match to protein family HMM PF01391. (400 aa)    
Predicted Functional Partners:
ftsK
DNA translocase FtsK; Identified by similarity to SP:P21458; match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.705
CPF_2138
Hypothetical protein; Identified by glimmer; putative.
 
 
 0.544
CPF_1203
Putative metal-dependent hydrolase, membrane-bound; Identified by match to protein family HMM PF04307.
  
  
 0.529
CPF_1574
Putative phage structural protein; Identified by match to protein family HMM PF01551; match to protein family HMM TIGR01665.
 
 
 0.489
CPF_0495
Conserved hypothetical protein; Identified by similarity to GB:BAC14481.1; match to protein family HMM TIGR01167.
  
 
 0.468
CPF_1583
Phage protein, QlrG family; Identified by match to protein family HMM TIGR01560.
  
 
 0.441
CPF_0965
Putative membrane protein; Identified by similarity to GB:AAL96783.1.
  
 
 0.423
CPF_1576
Phage tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
 
    0.423
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.414
arsC
Arsenate reductase ArsC; Identified by similarity to SP:Q01257; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
 
 0.411
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (16%) [HD]