CPF_1247 protein (Clostridium perfringens ATCC 13124)

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Score

CPF_1247

Identified by match to protein family HMM PF01171; Belongs to the TtcA family. (244 aa)

Predicted Functional Partners:

CPF_1720

0.902

truA1

0.593

folBK

0.572

pth

0.553

mfd

0.505

trmB

0.421

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_1247	CPF_1720	CPF_1247	CPF_1720	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	0.902
CPF_1247	folBK	CPF_1247	CPF_1277	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	0.572
CPF_1247	mfd	CPF_1247	CPF_2807	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.	0.505
CPF_1247	pth	CPF_1247	CPF_2808	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.	0.553
CPF_1247	trmB	CPF_1247	CPF_0427	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.421
CPF_1247	truA1	CPF_1247	CPF_1248	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.593
CPF_1720	CPF_1247	CPF_1720	CPF_1247	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	0.902
folBK	CPF_1247	CPF_1277	CPF_1247	Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	0.572
mfd	CPF_1247	CPF_2807	CPF_1247	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	0.505
mfd	pth	CPF_2807	CPF_2808	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.	peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.	0.913
mfd	truA1	CPF_2807	CPF_1248	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.568
pth	CPF_1247	CPF_2808	CPF_1247	peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	0.553
pth	mfd	CPF_2808	CPF_2807	peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.	0.913
trmB	CPF_1247	CPF_0427	CPF_1247	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	0.421
trmB	truA1	CPF_0427	CPF_1248	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.444
truA1	CPF_1247	CPF_1248	CPF_1247	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	Identified by match to protein family HMM PF01171; Belongs to the TtcA family.	0.593
truA1	mfd	CPF_1248	CPF_2807	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.	0.568
truA1	trmB	CPF_1248	CPF_0427	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.444