Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1285Conserved hypothetical protein; Identified by similarity to PIR:D83749; match to protein family HMM PF01547. (467 aa)    
Predicted Functional Partners:
CPF_2338
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.977
CPF_2339
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.960
CPF_2344
DNA-binding response regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
   
 0.773
CPF_0428
Conserved hypothetical protein; Identified by similarity to PIR:AG1527; match to protein family HMM PF06824.
 
   
 0.758
CPF_0285
endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF00801; match to protein family HMM PF03644; match to protein family HMM TIGR01167.
 
   
 0.754
CPF_2654
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
  
 
 0.751
CPF_0815
Glycosyl hydrolase, family 85; Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF03644.
 
     0.729
CPF_2345
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580.
 
   
 0.713
CPF_2337
Putative alpha-mannosidase; Identified by similarity to GB:BAB40444.2; match to protein family HMM PF01074; match to protein family HMM PF07748; match to protein family HMM PF09261.
 
   
 0.691
CPF_1103
Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00728.
 
   
 0.686
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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