Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_1286Transcriptional regulator, ArsR family/dinitrogenase iron-molybdenum cofactor family protein; Identified by match to protein family HMM PF01022; match to protein family HMM PF02579. (244 aa)    
Predicted Functional Partners:
CPF_1135
Identified by match to protein family HMM PF00037; match to protein family HMM PF00881.
 
  
 0.661
CPF_0534
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.650
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.632
CPF_2351
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
  
 0.612
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
  
 0.601
cadA
Cadmium-translocating P-type ATPase; Identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
 
  
 0.576
modA
Molybdate ABC transporter, molybdate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256.
  
  
 0.565
CPF_1269
Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.
  
  
 0.561
CPF_0728
Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992.
  
  
 0.550
CPF_2672
Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family.
     
 0.527
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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