Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPF_1306 | cfa | CPF_1306 | CPF_1307 | Hypothetical protein; Identified by glimmer; putative. | Cyclopropane-fatty-acyl-phospholipid synthase; Identified by similarity to SP:P30010; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.469 |
cfa | CPF_1306 | CPF_1307 | CPF_1306 | Cyclopropane-fatty-acyl-phospholipid synthase; Identified by similarity to SP:P30010; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. | Hypothetical protein; Identified by glimmer; putative. | 0.469 |
cfa | guaA | CPF_1307 | CPF_2557 | Cyclopropane-fatty-acyl-phospholipid synthase; Identified by similarity to SP:P30010; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.523 |
cfa | nifJ | CPF_1307 | CPF_2318 | Cyclopropane-fatty-acyl-phospholipid synthase; Identified by similarity to SP:P30010; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. | Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.406 |
guaA | cfa | CPF_2557 | CPF_1307 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Cyclopropane-fatty-acyl-phospholipid synthase; Identified by similarity to SP:P30010; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.523 |
nifJ | cfa | CPF_2318 | CPF_1307 | Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | Cyclopropane-fatty-acyl-phospholipid synthase; Identified by similarity to SP:P30010; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.406 |