| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CPF_0426 | CPF_1655 | CPF_0426 | CPF_1655 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Identified by match to protein family HMM PF00929. | 0.866 |
| CPF_0426 | cinA | CPF_0426 | CPF_0130 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | cinA family protein; Identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | 0.664 |
| CPF_0426 | dinB | CPF_0426 | CPF_1818 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.571 |
| CPF_0426 | lexA | CPF_0426 | CPF_1364 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.539 |
| CPF_0426 | polA | CPF_0426 | CPF_2250 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.824 |
| CPF_0426 | recA | CPF_0426 | CPF_1927 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.797 |
| CPF_0426 | recN | CPF_0426 | CPF_2069 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.414 |
| CPF_0426 | uvrC | CPF_0426 | CPF_0341 | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.773 |
| CPF_1365 | lexA | CPF_1365 | CPF_1364 | Conserved hypothetical protein; Identified by similarity to GB:AAO35863.1. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.630 |
| CPF_1655 | CPF_0426 | CPF_1655 | CPF_0426 | Identified by match to protein family HMM PF00929. | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.866 |
| CPF_1655 | cinA | CPF_1655 | CPF_0130 | Identified by match to protein family HMM PF00929. | cinA family protein; Identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | 0.548 |
| CPF_1655 | dinB | CPF_1655 | CPF_1818 | Identified by match to protein family HMM PF00929. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.520 |
| CPF_1655 | lexA | CPF_1655 | CPF_1364 | Identified by match to protein family HMM PF00929. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.513 |
| CPF_1655 | polA | CPF_1655 | CPF_2250 | Identified by match to protein family HMM PF00929. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.691 |
| CPF_1655 | recA | CPF_1655 | CPF_1927 | Identified by match to protein family HMM PF00929. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.511 |
| CPF_1655 | recN | CPF_1655 | CPF_2069 | Identified by match to protein family HMM PF00929. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.604 |
| CPF_1655 | uvrC | CPF_1655 | CPF_0341 | Identified by match to protein family HMM PF00929. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.448 |
| cinA | CPF_0426 | CPF_0130 | CPF_0426 | cinA family protein; Identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.664 |
| cinA | CPF_1655 | CPF_0130 | CPF_1655 | cinA family protein; Identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | Identified by match to protein family HMM PF00929. | 0.548 |
| cinA | dinB | CPF_0130 | CPF_1818 | cinA family protein; Identified by similarity to SP:P46323; match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.460 |
