Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPF_1375Haloacid dehalogenase, IB family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490. (244 aa)    
Predicted Functional Partners:
CPF_2313
HAD-superfamily subfamily IB hydrolase, TIGR01490; Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490.
  
     0.521
CPF_1376
Conserved hypothetical protein; Identified by similarity to GB:AAM24193.1.
       0.512
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.467
CPF_2126
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.459
CPF_1682
Identified by match to protein family HMM PF04607.
  
     0.412
CPF_1295
Putative L-threonine-O-3-phosphate decarboxylase; Identified by similarity to GB:AAC79515.1; match to protein family HMM PF00155; match to protein family HMM TIGR01140.
  
  
 0.410
CPF_1623
Identified by match to protein family HMM PF00155; match to protein family HMM PF04864.
  
  
 0.410
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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