Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_1406Putative CoA-substrate-specific enzyme activase; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241. (975 aa)    
Predicted Functional Partners:
CPF_1405
Conserved hypothetical protein; Identified by similarity to GB:AAP78125.1.
   
 0.997
CPF_1398
Putative membrane protein; Identified by match to protein family HMM PF06541.
 
    0.673
CPF_0415
Conserved hypothetical protein; Identified by similarity to GB:AAN58407.1; match to protein family HMM PF06541.
 
    0.599
CPF_1402
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.515
CPF_1403
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.515
CPF_1404
Hypothetical protein; Identified by glimmer; putative.
       0.515
nrdD-2
Anaerobic ribonucleoside-triphosphate reductase; Identified by similarity to SP:P28903; match to protein family HMM PF03477; match to protein family HMM TIGR02487.
 
    0.428
CPF_1407
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.
       0.409
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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