CPF_1482 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_1482

Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (321 aa)

Predicted Functional Partners:

CPF_1481

0.673

CPF_1483

0.537

CPF_1734

0.506

guaA

0.497

polA

0.468

CPF_0761

0.442

CPF_1771

0.433

truA1

0.428

CPF_0986

0.427

CPF_2359

0.424

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0761	CPF_1482	CPF_0761	CPF_1482	Conserved hypothetical protein; Identified by similarity to PIR:F96989.	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.442
CPF_0761	CPF_1734	CPF_0761	CPF_1734	Conserved hypothetical protein; Identified by similarity to PIR:F96989.	Conserved hypothetical protein; Identified by similarity to GB:AAO79751.1.	0.492
CPF_0761	CPF_1771	CPF_0761	CPF_1771	Conserved hypothetical protein; Identified by similarity to PIR:F96989.	Hypothetical protein; Identified by glimmer; putative.	0.537
CPF_0986	CPF_1482	CPF_0986	CPF_1482	fliB domain protein; Identified by similarity to SP:Q56106.	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.427
CPF_1481	CPF_1482	CPF_1481	CPF_1482	Conserved hypothetical protein; Identified by similarity to GB:BAB80980.1.	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.673
CPF_1482	CPF_0761	CPF_1482	CPF_0761	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Conserved hypothetical protein; Identified by similarity to PIR:F96989.	0.442
CPF_1482	CPF_0986	CPF_1482	CPF_0986	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	fliB domain protein; Identified by similarity to SP:Q56106.	0.427
CPF_1482	CPF_1481	CPF_1482	CPF_1481	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Conserved hypothetical protein; Identified by similarity to GB:BAB80980.1.	0.673
CPF_1482	CPF_1483	CPF_1482	CPF_1483	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.	0.537
CPF_1482	CPF_1734	CPF_1482	CPF_1734	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Conserved hypothetical protein; Identified by similarity to GB:AAO79751.1.	0.506
CPF_1482	CPF_1771	CPF_1482	CPF_1771	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Hypothetical protein; Identified by glimmer; putative.	0.433
CPF_1482	CPF_2359	CPF_1482	CPF_2359	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	Helicase domain protein; Identified by match to protein family HMM PF00271.	0.424
CPF_1482	guaA	CPF_1482	CPF_2557	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.497
CPF_1482	polA	CPF_1482	CPF_2250	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.468
CPF_1482	truA1	CPF_1482	CPF_1248	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.428
CPF_1483	CPF_1482	CPF_1483	CPF_1482	Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.537
CPF_1734	CPF_0761	CPF_1734	CPF_0761	Conserved hypothetical protein; Identified by similarity to GB:AAO79751.1.	Conserved hypothetical protein; Identified by similarity to PIR:F96989.	0.492
CPF_1734	CPF_1482	CPF_1734	CPF_1482	Conserved hypothetical protein; Identified by similarity to GB:AAO79751.1.	Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.506
CPF_1734	CPF_1771	CPF_1734	CPF_1771	Conserved hypothetical protein; Identified by similarity to GB:AAO79751.1.	Hypothetical protein; Identified by glimmer; putative.	0.405
CPF_1771	CPF_0761	CPF_1771	CPF_0761	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by similarity to PIR:F96989.	0.537

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About