Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoVRStage V sporulation protein R; Identified by similarity to SP:P37875; match to protein family HMM PF04293. (449 aa)    
Predicted Functional Partners:
yhbH
Sporulation protein YhbH; Identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877; Belongs to the UPF0229 family.
 
  
 0.992
prkA
Serine protein kinase; Identified by similarity to PIR:JC4602; match to protein family HMM PF06798; match to protein family HMM PF08298.
 
  
 0.992
CPF_1538
Rubrerythrin; Identified by match to protein family HMM PF02915.
       0.715
CPF_1537
Conserved hypothetical protein; Identified by similarity to GB:AAO34984.1.
       0.661
recQ-2
ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.
       0.521
spoIIID
Stage III sporulation protein D; Identified by similarity to SP:P15281; match to protein family HMM TIGR02844.
   
  
 0.491
CPF_1618
OB-fold nucleic acid binding domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF01336; match to protein family HMM TIGR01167.
   
    0.466
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
   
  
 0.426
spoVAF
Spore germination protein AF; Identified by similarity to SP:P31845; match to protein family HMM PF03323.
      
 0.424
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.419
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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