Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1555Conserved hypothetical protein; Identified by similarity to PIR:E96982; match to protein family HMM PF04239. (232 aa)    
Predicted Functional Partners:
CPF_1556
Conserved hypothetical protein; Identified by similarity to PIR:D96982.
       0.832
spoVAC
Stage V sporulation protein AC; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838.
 
  
 0.672
spoVAD
Stage V sporulation protein AD; Identified by similarity to SP:P40869; match to protein family HMM PF07451; match to protein family HMM TIGR02845.
 
  
 0.670
spoVAE
Stage V sporulation protein AE; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839.
 
  
 0.654
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.631
CPF_0629
Spore germination protein; Identified by match to protein family HMM PF03323.
 
  
 0.624
CPF_2058
Conserved hypothetical protein; Identified by similarity to GB:AAO36078.1; match to protein family HMM PF09579; match to protein family HMM TIGR02874.
  
     0.576
fba
Fructose-1,6-bisphosphate aldolase, class II; Identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859.
       0.558
CPF_1554
Identified by match to protein family HMM PF00485.
       0.556
CPF_2297
Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867.
  
     0.532
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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