Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1567Conserved hypothetical protein; Identified by similarity to GB:AAR27352.1. (100 aa)    
Predicted Functional Partners:
CPF_2487
Putative mannosyltransferase; Identified by match to protein family HMM PF00534.
   
    0.614
CPF_1566
Identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.465
CPF_1568
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183; match to protein family HMM PF08239.
       0.449
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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