STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1582Putative phage head-tail adaptor; Identified by match to protein family HMM TIGR01563. (109 aa)    
Predicted Functional Partners:
CPF_1583
Phage protein, QlrG family; Identified by match to protein family HMM TIGR01560.
  
 
 0.920
CPF_1584
Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.
  
 
 0.898
CPF_1586
Phage portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
  
 
 0.826
CPF_1580
Conserved hypothetical protein; Identified by similarity to GB:AAL96780.1.
       0.787
CPF_1581
Phage protein, HK97 gp10 family; Identified by match to protein family HMM TIGR01725.
       0.773
CPF_1579
Phage major tail protein, phi13 family; Identified by match to protein family HMM TIGR01603.
  
    0.751
CPF_1578
Conserved hypothetical protein; Identified by similarity to GB:AAL96782.1.
       0.737
CPF_1576
Phage tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
  
  
 0.685
CPF_1585
Phage prohead protease, HK97 family; Identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543.
     
 0.672
CPF_1587
Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354.
  
    0.661
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.