STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaBReplicative DNA helicase; Identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796. (427 aa)    
Predicted Functional Partners:
dnaB-2
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
  
 
0.918
CPF_1595
Single-strand DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
 
 
 0.905
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
 0.894
CPF_1598
Conserved hypothetical protein; Identified by similarity to GB:AAL96804.1; match to protein family HMM PF09524; match to protein family HMM TIGR02220.
  
  
 0.806
CPF_1596
Hypothetical protein; Identified by glimmer; putative.
       0.762
CPF_2940
Putative DNA replication protein DnaC; Identified by similarity to SP:P07905.
  
 
 0.744
CPF_1599
Conserved hypothetical protein; Identified by similarity to GB:AAL96803.1.
       0.684
CPF_1600
Conserved domain protein; Identified by similarity to GB:AAO35656.1.
       0.649
ssb
Single-strand binding protein; Identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621.
 
 
 0.647
CPF_0426
Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573.
 
 
 0.637
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.