Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1658Conserved hypothetical protein; Identified by similarity to GB:AAO35894.1. (383 aa)    
Predicted Functional Partners:
CPF_1851
Conserved hypothetical protein; Identified by similarity to GB:AAO34823.1.
  
     0.701
CPF_2975
Conserved hypothetical protein; Identified by similarity to PIR:E97356.
  
     0.639
ytxC
Putative sporulation protein YtxC; Identified by similarity to PIR:D97191; match to protein family HMM PF08812; match to protein family HMM TIGR02834.
  
     0.584
CPF_0517
Hypothetical protein; Identified by glimmer; putative.
  
     0.544
CPF_2168
Conserved hypothetical protein; Identified by similarity to PIR:A97194.
  
     0.521
yyaC
Putative sporulation protein YyaC; Identified by similarity to PIR:E97251; match to protein family HMM PF06866; match to protein family HMM TIGR02841.
  
    0.516
CPF_1657
Hypothetical protein; Identified by glimmer; putative.
       0.513
CPF_2475
Stage II sporulation protein R; Identified by similarity to SP:P39151; match to protein family HMM PF09551; match to protein family HMM TIGR02837.
  
     0.510
CPF_2055
Oxidoreductase family protein; Identified by similarity to SP:P25983.
  
     0.507
CPF_2148
Conserved hypothetical protein; Identified by similarity to PIR:E97191.
  
     0.489
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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