CPF_1679 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_1679

Putative membrane protein; Identified by match to protein family HMM PF06166. (309 aa)

Predicted Functional Partners:

CPF_1680

0.957

pcp

0.942

CPF_1677

0.848

clpB

0.420

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_1677	CPF_1679	CPF_1677	CPF_1679	Conserved hypothetical protein; Identified by similarity to GB:AAM24816.1; match to protein family HMM PF06094.	Putative membrane protein; Identified by match to protein family HMM PF06166.	0.848
CPF_1677	CPF_1680	CPF_1677	CPF_1680	Conserved hypothetical protein; Identified by similarity to GB:AAM24816.1; match to protein family HMM PF06094.	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	0.841
CPF_1677	pcp	CPF_1677	CPF_1678	Conserved hypothetical protein; Identified by similarity to GB:AAM24816.1; match to protein family HMM PF06094.	Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.	0.854
CPF_1679	CPF_1677	CPF_1679	CPF_1677	Putative membrane protein; Identified by match to protein family HMM PF06166.	Conserved hypothetical protein; Identified by similarity to GB:AAM24816.1; match to protein family HMM PF06094.	0.848
CPF_1679	CPF_1680	CPF_1679	CPF_1680	Putative membrane protein; Identified by match to protein family HMM PF06166.	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	0.957
CPF_1679	clpB	CPF_1679	CPF_1681	Putative membrane protein; Identified by match to protein family HMM PF06166.	clpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	0.420
CPF_1679	pcp	CPF_1679	CPF_1678	Putative membrane protein; Identified by match to protein family HMM PF06166.	Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.	0.942
CPF_1680	CPF_1677	CPF_1680	CPF_1677	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	Conserved hypothetical protein; Identified by similarity to GB:AAM24816.1; match to protein family HMM PF06094.	0.841
CPF_1680	CPF_1679	CPF_1680	CPF_1679	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	Putative membrane protein; Identified by match to protein family HMM PF06166.	0.957
CPF_1680	clpB	CPF_1680	CPF_1681	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	clpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	0.427
CPF_1680	pcp	CPF_1680	CPF_1678	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.	0.937
clpB	CPF_1679	CPF_1681	CPF_1679	clpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	Putative membrane protein; Identified by match to protein family HMM PF06166.	0.420
clpB	CPF_1680	CPF_1681	CPF_1680	clpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	0.427
pcp	CPF_1677	CPF_1678	CPF_1677	Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.	Conserved hypothetical protein; Identified by similarity to GB:AAM24816.1; match to protein family HMM PF06094.	0.854
pcp	CPF_1679	CPF_1678	CPF_1679	Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.	Putative membrane protein; Identified by match to protein family HMM PF06166.	0.942
pcp	CPF_1680	CPF_1678	CPF_1680	Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.	Conserved hypothetical protein; Identified by similarity to GB:AAM24813.1; match to protein family HMM PF06149.	0.937