STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsC-2Anaerobic sulfite reductase, subunit C; Identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (326 aa)    
Predicted Functional Partners:
asrB
Anaerobic sulfite reductase, subunit B; Identified by similarity to SP:P26475; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02911.
 
  
 0.997
CPF_1693
Sulfite reductase, iron-sulfur subunit; Identified by similarity to SP:P26474; match to protein family HMM TIGR02910.
 
 0.997
CPF_1789
Anaerobic sulfite reductase, A subunit; Identified by similarity to SP:P26474; match to protein family HMM TIGR02910.
 
 0.989
CPF_1788
Anaerobic sulfite reductase, B subunit; Identified by similarity to SP:P26475; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02911.
 
  
 0.985
CPF_0170
Identified by similarity to SP:P37887; match to protein family HMM PF00291.
  
 
 0.907
CPF_1787
Anaerobic sulfite reductase, C subunit; Identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 
0.906
cysK
Cysteine synthase A; Identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
  0.904
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.688
CPF_1694
Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
 
    0.644
fnt
Formate/nitrite transporter; Identified by similarity to SP:P11097; match to protein family HMM PF01226.
 
     0.575
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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