Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_1693Sulfite reductase, iron-sulfur subunit; Identified by similarity to SP:P26474; match to protein family HMM TIGR02910. (338 aa)    
Predicted Functional Partners:
asrB
Anaerobic sulfite reductase, subunit B; Identified by similarity to SP:P26475; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02911.
 
 0.998
arsC-2
Anaerobic sulfite reductase, subunit C; Identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.997
CPF_1788
Anaerobic sulfite reductase, B subunit; Identified by similarity to SP:P26475; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02911.
 
 0.992
CPF_1787
Anaerobic sulfite reductase, C subunit; Identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.987
CPF_1789
Anaerobic sulfite reductase, A subunit; Identified by similarity to SP:P26474; match to protein family HMM TIGR02910.
  
  
 
0.904
CPF_0170
Identified by similarity to SP:P37887; match to protein family HMM PF00291.
     
 0.902
cysK
Cysteine synthase A; Identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.902
CPF_1694
Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
 
     0.674
CPF_2929
Conserved hypothetical protein; Identified by similarity to PIR:C97100; match to protein family HMM PF06555.
  
 
 0.671
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.624
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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