Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1698Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (686 aa)    
Predicted Functional Partners:
CPF_1096
Putative membrane protein.
  
     0.569
CPF_0765
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
  
     0.497
CPF_1780
Putative lipoprotein.
  
     0.456
CPF_1696
Putative membrane protein.
       0.453
CPF_1697
GIY-YIG domain protein; Identified by match to protein family HMM PF01541.
       0.453
CPF_0450
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.452
CPF_1762
Putative membrane protein; Identified by match to protein family HMM PF03703.
  
    0.435
CPF_2222
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
 
 0.425
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.409
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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