Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1699Conserved hypothetical protein. (421 aa)    
Predicted Functional Partners:
CPF_0278
Conserved hypothetical protein; Identified by similarity to GB:AAK78295.1; match to protein family HMM PF08876.
  
    0.775
CPF_2497
Identified by match to protein family HMM PF05866.
  
     0.770
CPF_2126
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
   0.764
CPF_0653
hesB family protein; Selenoprotein. identified by match to protein family HMM TIGR01911.
  
    0.763
CPF_1559
Putative adenylate cyclase; Identified by match to protein family HMM PF01928.
 
     0.761
CPF_1704
Conserved hypothetical protein; Identified by similarity to GB:AAO35153.1; match to protein family HMM PF06803.
 
     0.744
CPF_1896
ATP synthase homolog; Identified by similarity to SP:P00859; match to protein family HMM TIGR02926.
  
    0.713
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
   
 0.705
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
    0.694
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.
  
     0.675
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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