Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1733Kinase, pfkB family; Identified by match to protein family HMM PF00294. (321 aa)    
Predicted Functional Partners:
rbsD
Ribose ABC transporter, ribose-binding protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.780
CPF_1548
Putative galactoside ABC transporter, galactoside-binding protein; Identified by similarity to SP:P23905.
 
  
 0.746
CPF_1734
Conserved hypothetical protein; Identified by similarity to GB:AAO79751.1.
       0.718
rbsC
Ribose ABC transporter, permease protein; Identified by similarity to SP:P04984; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.706
mglA
Galactoside ABC transporter, ATP-binding protein; Part of the ABC transporter complex MglABC involved in galactose/methyl galactoside import. Responsible for energy coupling to the transport system.
  
  
 0.663
rbsA
Ribose ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.663
CPF_1732
Hypothetical protein; Identified by glimmer; putative.
       0.563
CPF_0662
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
   
 0.540
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
 
  0.527
CPF_1852
Thiamine monophosphate synthase family protein; Identified by similarity to SP:P25053; match to protein family HMM PF02581.
  
 
  0.527
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.