Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_1780Putative lipoprotein. (445 aa)    
Predicted Functional Partners:
CPF_0630
Spore germination protein; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887.
  
     0.595
CPF_0593
Conserved domain protein.
  
     0.527
CPF_2328
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.527
CPF_1762
Putative membrane protein; Identified by match to protein family HMM PF03703.
  
     0.470
CPF_1698
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.456
CPF_0700
Putative membrane protein; Identified by similarity to GB:BAB80411.1.
  
     0.450
CPF_1899
Conserved hypothetical protein; Identified by similarity to PIR:G97025.
  
     0.446
CPF_1779
Hypothetical protein; Identified by glimmer; putative.
       0.437
CPF_0628
Spore germination protein; Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912.
  
     0.426
CPF_1133
Conserved domain protein; Identified by similarity to GB:AAP27300.1.
  
     0.402
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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