Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_1877Putative membrane protein. (641 aa)    
Predicted Functional Partners:
CPF_1489
F5/8 type C domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305.
  
     0.625
CPF_0796
Conserved hypothetical protein; Identified by similarity to SP:P28671.
  
    0.560
CPF_1189
Pentapeptide repeat protein; Identified by match to protein family HMM PF00805.
 
     0.532
CPF_0252
Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559.
  
     0.520
CPF_1073
Discoidin domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305.
  
     0.516
CPF_1876
Putative lipoprotein; Identified by similarity to PIR:A97351.
       0.510
CPF_1025
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.502
CPF_1712
Hypothetical protein; Identified by glimmer; putative.
  
     0.487
CPF_0798
Conserved domain protein; Identified by similarity to GB:AAS08237.1.
  
     0.478
CPF_1441
Conserved hypothetical protein.
   
    0.475
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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