Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsARibose ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (501 aa)    
Predicted Functional Partners:
rbsC
Ribose ABC transporter, permease protein; Identified by similarity to SP:P04984; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 0.998
CPF_1548
Putative galactoside ABC transporter, galactoside-binding protein; Identified by similarity to SP:P23905.
 
 
 0.927
rbsD
Ribose ABC transporter, ribose-binding protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.915
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.863
mglC
Galactoside ABC transporter, permease protein; Identified by similarity to SP:Q56036; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.831
metG-2
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.741
CPF_1733
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.663
CPF_1830
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
     0.550
CPF_1829
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.519
CPF_1516
Lipoprotein, BMP family; Identified by match to protein family HMM PF02608.
 
     0.449
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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