Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1899Conserved hypothetical protein; Identified by similarity to PIR:G97025. (428 aa)    
Predicted Functional Partners:
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
     0.745
spoVB-2
Stage V sporulation protein B; Identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900.
 
     0.714
CPF_0234
Putative membrane protein.
  
     0.699
CPF_0735
Putative fibronectin-binding protein; Identified by similarity to GB:CAC69846.1; match to protein family HMM PF07299.
  
     0.649
CPF_1897
Radical SAM domain protein; Identified by match to protein family HMM PF02310; match to protein family HMM PF04055.
       0.624
CPF_1898
Conserved hypothetical protein; Identified by similarity to PIR:A97026.
       0.624
CPF_2576
Conserved hypothetical protein; Identified by similarity to GB:AAV96664.1.
  
    0.619
CPF_1699
Conserved hypothetical protein.
  
    0.615
CPF_2254
Conserved hypothetical protein; Identified by similarity to GB:AAO35390.1.
  
     0.605
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
     0.593
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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