STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1904Hypothetical protein; Identified by glimmer; putative. (333 aa)    
Predicted Functional Partners:
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
 
     0.665
CPF_1902
Conserved hypothetical protein; Identified by similarity to PIR:G97101; Belongs to the CvfB family.
  
    0.605
CPF_1903
Bacterial transferase hexpeptide repeat protein; Identified by match to protein family HMM PF00132.
       0.597
CPF_2254
Conserved hypothetical protein; Identified by similarity to GB:AAO35390.1.
  
     0.565
CPF_0234
Putative membrane protein.
  
     0.490
CPF_1899
Conserved hypothetical protein; Identified by similarity to PIR:G97025.
  
     0.471
spoIIIAH
Stage III sporulation protein AH.
  
     0.471
CPF_1858
GTP pyrophosphokinase homolog; Identified by match to protein family HMM PF04607.
  
     0.459
CPF_2479
lysM domain protein; Identified by match to protein family HMM PF01476.
 
     0.435
yabQ
Spore cortex biosynthesis protein YabQ; Identified by similarity to PIR:E97294; match to protein family HMM TIGR02893.
  
     0.422
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.