node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPF_1655 | CPF_1920 | CPF_1655 | CPF_1920 | Identified by match to protein family HMM PF00929. | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | 0.929 |
CPF_1655 | CPF_2759 | CPF_1655 | CPF_2759 | Identified by match to protein family HMM PF00929. | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | 0.961 |
CPF_1655 | dnaN | CPF_1655 | CPF_0002 | Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.971 |
CPF_1655 | dnaX | CPF_1655 | CPF_0052 | Identified by match to protein family HMM PF00929. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.961 |
CPF_1655 | holA | CPF_1655 | CPF_2300 | Identified by match to protein family HMM PF00929. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.959 |
CPF_1655 | polC | CPF_1655 | CPF_1945 | Identified by match to protein family HMM PF00929. | DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.937 |
CPF_1899 | CPF_1920 | CPF_1899 | CPF_1920 | Conserved hypothetical protein; Identified by similarity to PIR:G97025. | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | 0.745 |
CPF_1899 | CPF_1933 | CPF_1899 | CPF_1933 | Conserved hypothetical protein; Identified by similarity to PIR:G97025. | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | 0.550 |
CPF_1899 | CPF_2124 | CPF_1899 | CPF_2124 | Conserved hypothetical protein; Identified by similarity to PIR:G97025. | Hypothetical protein; Identified by glimmer; putative. | 0.591 |
CPF_1899 | CPF_2176 | CPF_1899 | CPF_2176 | Conserved hypothetical protein; Identified by similarity to PIR:G97025. | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | 0.564 |
CPF_1920 | CPF_1655 | CPF_1920 | CPF_1655 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Identified by match to protein family HMM PF00929. | 0.929 |
CPF_1920 | CPF_1899 | CPF_1920 | CPF_1899 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Conserved hypothetical protein; Identified by similarity to PIR:G97025. | 0.745 |
CPF_1920 | CPF_1933 | CPF_1920 | CPF_1933 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | 0.749 |
CPF_1920 | CPF_2124 | CPF_1920 | CPF_2124 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Hypothetical protein; Identified by glimmer; putative. | 0.759 |
CPF_1920 | CPF_2176 | CPF_1920 | CPF_2176 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | 0.774 |
CPF_1920 | CPF_2759 | CPF_1920 | CPF_2759 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | 0.947 |
CPF_1920 | dnaN | CPF_1920 | CPF_0002 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.961 |
CPF_1920 | dnaX | CPF_1920 | CPF_0052 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.947 |
CPF_1920 | holA | CPF_1920 | CPF_2300 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.953 |
CPF_1920 | polC | CPF_1920 | CPF_1945 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.906 |