Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
spoVSStage V sporulation protein S; Identified by match to protein family HMM PF04232. (86 aa)    
Predicted Functional Partners:
rny
HDIG/KH domain protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.624
aspB
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
       0.620
CPF_1923
Phosphocarrier, HPr family; Identified by similarity to SP:P07515; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
    0.515
spoIIM
Stage II sporulation protein M; Identified by similarity to SP:P37873; match to protein family HMM PF01944; match to protein family HMM TIGR02831.
  
   
 0.476
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.465
spoVG
Stage V sporulation protein G; Could be involved in septation.
      
 0.409
CPF_0277
Transcriptional regulator, AbrB family; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.
  
   
 0.408
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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