STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_1985DAK2 domain protein; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599. (548 aa)    
Predicted Functional Partners:
CPF_2832
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
 0.990
CPF_1986
Conserved hypothetical protein; Identified by similarity to GB:AAO35798.1; match to protein family HMM PF03780.
 
  
 0.988
CPF_1517
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
 0.985
CPF_0030
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
 0.968
CPF_0301
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
 0.957
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.687
rpmB
50S ribosomal protein L28; Identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.591
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.548
CPF_1983
RNA methyltransferase, RsmD family; Identified by similarity to SP:P0ADY0; match to protein family HMM PF03602; match to protein family HMM TIGR00095.
       0.548
CPF_1980
Conserved hypothetical protein; Identified by similarity to GB:AAO35803.1.
 
     0.505
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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