Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpeRibulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family. (217 aa)    
Predicted Functional Partners:
CPF_0292
Putative transketolase, N-terminal subunit; Identified by similarity to SP:Q58094; match to protein family HMM PF00456.
  
 0.996
CPF_0293
Putative transketolase, C-terminal subunit; Identified by similarity to SP:Q58092; match to protein family HMM PF02779; match to protein family HMM PF02780.
 
 
 0.963
rpiB
Ribose 5-phosphate isomerase B; Identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120.
 
 
 0.955
araD
L-ribulose-5-phosphate 4-epimerase; Identified by similarity to SP:P39306; match to protein family HMM PF00596; match to protein family HMM TIGR00760.
  
 
 0.940
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
  
 0.940
CPF_1988
Thiamine pyrophosphokinase; Identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378.
  
  
 0.881
CPF_0398
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
  
 0.849
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01832.
   
 
 0.814
tal
Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
 
 
 0.689
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
 
 
 
 0.655
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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