node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPF_0252 | rpoA | CPF_0252 | CPF_2685 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.960 |
CPF_0252 | rpoB | CPF_0252 | CPF_2722 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
CPF_0252 | rpoC | CPF_0252 | CPF_2721 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.966 |
CPF_0252 | rpoD | CPF_0252 | CPF_2264 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.970 |
CPF_0252 | rpoZ | CPF_0252 | CPF_2000 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.956 |
CPF_0360 | CPF_1408 | CPF_0360 | CPF_1408 | Hypothetical protein; Identified by glimmer; putative. | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. | 0.999 |
CPF_0360 | rplF | CPF_0360 | CPF_2699 | Hypothetical protein; Identified by glimmer; putative. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.986 |
CPF_0360 | rpoA | CPF_0360 | CPF_2685 | Hypothetical protein; Identified by glimmer; putative. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
CPF_0360 | rpoB | CPF_0360 | CPF_2722 | Hypothetical protein; Identified by glimmer; putative. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
CPF_0360 | rpoC | CPF_0360 | CPF_2721 | Hypothetical protein; Identified by glimmer; putative. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.970 |
CPF_0360 | rpoD | CPF_0360 | CPF_2264 | Hypothetical protein; Identified by glimmer; putative. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.434 |
CPF_0360 | rpoZ | CPF_0360 | CPF_2000 | Hypothetical protein; Identified by glimmer; putative. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.996 |
CPF_1408 | CPF_0360 | CPF_1408 | CPF_0360 | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. | Hypothetical protein; Identified by glimmer; putative. | 0.999 |
CPF_1408 | rpoA | CPF_1408 | CPF_2685 | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.972 |
CPF_1408 | rpoB | CPF_1408 | CPF_2722 | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.968 |
CPF_1408 | rpoC | CPF_1408 | CPF_2721 | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.915 |
CPF_1408 | rpoZ | CPF_1408 | CPF_2000 | Putative ATP-dependent helicase; Identified by similarity to SP:P26659; match to protein family HMM PF06733. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.989 |
gmk | rpoZ | CPF_2001 | CPF_2000 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.981 |
nusA | rplF | CPF_1943 | CPF_2699 | N utilization substance protein A; Participates in both transcription termination and antitermination. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.876 |
nusA | rpoA | CPF_1943 | CPF_2685 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |