STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2005L-asparaginase; Identified by match to protein family HMM PF00710. (327 aa)    
Predicted Functional Partners:
aspD
L-aspartate beta-decarboxylase; Identified by similarity to GB:BAB92080.1; match to protein family HMM PF00155.
 
  
 0.922
asnA
Aspartate--ammonia ligase; Identified by similarity to SP:P00963; match to protein family HMM PF03590; match to protein family HMM TIGR00669.
     
 0.913
CPF_0325
L-aspartate beta-decarboxylase; Identified by similarity to GB:BAB92080.1; match to protein family HMM PF00155.
    
 0.911
aspB
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
    
 0.911
argG
Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 
 0.909
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.908
nadB
L-aspartate oxidase; Identified by match to protein family HMM PF00890; match to protein family HMM PF07992.
   
 
 0.907
pyrB
Aspartate carbamoyltransferase; Identified by similarity to SP:P00479; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
  0.900
CPF_2315
Glutamate decarboxylase; Identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; Belongs to the group II decarboxylase family.
   
 
 0.833
CPF_1932
Aspartokinase; Identified by similarity to SP:Q04795; match to protein family HMM PF00696; match to protein family HMM TIGR00657; Belongs to the aspartokinase family.
     
 0.825
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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