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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpsANAD-dependent glycerol-3-phosphate dehydrogenase family protein; Identified by similarity to SP:P46919; match to protein family HMM PF01210; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (331 aa)    
Predicted Functional Partners:
engA
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
 0.986
CPF_0411
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.
  
 
 0.909
CPF_2875
FAD-dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.
  
 
 0.909
CPF_2274
Identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569.
     
 0.840
plsD
Sn-glycerol-3-phosphate acyltransferase; Identified by similarity to GB:AAC46006.1; match to protein family HMM PF01553.
    
 0.838
CPF_1671
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.838
CPF_0095
Identified by match to protein family HMM PF02733; match to protein family HMM PF02734; match to protein family HMM TIGR02363; match to protein family HMM TIGR02365.
   
 
 0.831
CPF_2009
Conserved hypothetical protein; Identified by similarity to PIR:A97111; match to protein family HMM PF04459.
     
 0.831
CPF_0103
Identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231.
  
  
 0.668
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.583
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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