Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CPF_2010 | CPF_2011 | CPF_2010 | CPF_2011 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.809 |
| CPF_2010 | CPF_2013 | CPF_2010 | CPF_2013 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | 0.536 |
| CPF_2010 | ftsA | CPF_2010 | CPF_2019 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.446 |
| CPF_2010 | nrdR | CPF_2010 | CPF_2012 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.600 |
| CPF_2010 | sigG | CPF_2010 | CPF_2014 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.464 |
| CPF_2010 | spoIIGA | CPF_2010 | CPF_2016 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.432 |
| CPF_2011 | CPF_2010 | CPF_2011 | CPF_2010 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.809 |
| CPF_2011 | CPF_2013 | CPF_2011 | CPF_2013 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | 0.542 |
| CPF_2011 | ftsA | CPF_2011 | CPF_2019 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.442 |
| CPF_2011 | ftsZ | CPF_2011 | CPF_2018 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.467 |
| CPF_2011 | nrdR | CPF_2011 | CPF_2012 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.608 |
| CPF_2011 | sigG | CPF_2011 | CPF_2014 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.466 |
| CPF_2011 | spoIIGA | CPF_2011 | CPF_2016 | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.434 |
| CPF_2013 | CPF_2010 | CPF_2013 | CPF_2010 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.536 |
| CPF_2013 | CPF_2011 | CPF_2013 | CPF_2011 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | Conserved hypothetical protein; Identified by similarity to PIR:F97109; match to protein family HMM PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.542 |
| CPF_2013 | ftsA | CPF_2013 | CPF_2019 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.439 |
| CPF_2013 | ftsZ | CPF_2013 | CPF_2018 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.463 |
| CPF_2013 | nrdR | CPF_2013 | CPF_2012 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.697 |
| CPF_2013 | sigG | CPF_2013 | CPF_2014 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.829 |
| CPF_2013 | spoIIGA | CPF_2013 | CPF_2016 | PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888. | Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.856 |
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