asp protein (Clostridium perfringens ATCC 13124)

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[Homology]

Score

asp

Alkaline shock protein; Identified by similarity to SP:Q53485; match to protein family HMM PF03780. (129 aa)

Predicted Functional Partners:

CPF_2084

0.701

CPF_2081

0.693

spoIIIAH

0.688

nusB

0.686

CPF_2083

0.644

spoIIIAF

0.643

CPF_1968

0.628

CPF_2072

0.603

folD

0.602

xseA

0.580

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_1968	asp	CPF_1968	CPF_2079	DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.	Alkaline shock protein; Identified by similarity to SP:Q53485; match to protein family HMM PF03780.	0.628
CPF_2072	CPF_2081	CPF_2072	CPF_2081	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	0.474
CPF_2072	CPF_2083	CPF_2072	CPF_2083	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.	0.470
CPF_2072	CPF_2084	CPF_2072	CPF_2084	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Stage III sporulation protein AD; Identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849.	0.469
CPF_2072	asp	CPF_2072	CPF_2079	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Alkaline shock protein; Identified by similarity to SP:Q53485; match to protein family HMM PF03780.	0.603
CPF_2072	folD	CPF_2072	CPF_2077	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	folD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	0.792
CPF_2072	nusB	CPF_2072	CPF_2078	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.	0.719
CPF_2072	spoIIIAF	CPF_2072	CPF_2082	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Stage III sporulation protein AF; Identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896.	0.470
CPF_2072	spoIIIAH	CPF_2072	CPF_2080	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Stage III sporulation protein AH.	0.487
CPF_2072	xseA	CPF_2072	CPF_2076	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.	0.772
CPF_2081	CPF_2072	CPF_2081	CPF_2072	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	0.474
CPF_2081	CPF_2083	CPF_2081	CPF_2083	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.	0.984
CPF_2081	CPF_2084	CPF_2081	CPF_2084	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Stage III sporulation protein AD; Identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849.	0.978
CPF_2081	asp	CPF_2081	CPF_2079	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Alkaline shock protein; Identified by similarity to SP:Q53485; match to protein family HMM PF03780.	0.693
CPF_2081	folD	CPF_2081	CPF_2077	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	folD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	0.493
CPF_2081	nusB	CPF_2081	CPF_2078	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.	0.529
CPF_2081	spoIIIAF	CPF_2081	CPF_2082	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Stage III sporulation protein AF; Identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896.	0.965
CPF_2081	spoIIIAH	CPF_2081	CPF_2080	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Stage III sporulation protein AH.	0.991
CPF_2081	xseA	CPF_2081	CPF_2076	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.	0.493
CPF_2083	CPF_2072	CPF_2083	CPF_2072	Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.	Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.	0.470

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