Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2086Stage III sporulation protein AB; Identified by similarity to SP:Q01368; match to protein family HMM PF09548; match to protein family HMM TIGR02833. (171 aa)    
Predicted Functional Partners:
CPF_2087
Stage III sporulation protein AA; Identified by match to protein family HMM TIGR02858.
 
  
 0.994
CPF_2085
Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.
 
  
 0.974
CPF_2081
Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.
 
  
 0.969
CPF_2083
Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.
 
  
 0.967
CPF_2084
Stage III sporulation protein AD; Identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849.
 
  
 0.963
spoIIM
Stage II sporulation protein M; Identified by similarity to SP:P37873; match to protein family HMM PF01944; match to protein family HMM TIGR02831.
 
  
 0.892
spoIIIAF
Stage III sporulation protein AF; Identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896.
 
  
 0.869
spoIIIAH
Stage III sporulation protein AH.
  
  
 0.819
CPF_2068
Stage IV sporulation protein B; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
 
   
 0.811
yqfC
Sporulation protein YqfC; Identified by similarity to PIR:B97059; match to protein family HMM PF07241; match to protein family HMM TIGR02856.
  
  
 0.800
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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