Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2087Stage III sporulation protein AA; Identified by match to protein family HMM TIGR02858. (294 aa)    
Predicted Functional Partners:
CPF_2086
Stage III sporulation protein AB; Identified by similarity to SP:Q01368; match to protein family HMM PF09548; match to protein family HMM TIGR02833.
 
  
 0.994
CPF_2081
Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.
 
  
 0.965
CPF_2085
Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.
 
  
 0.958
CPF_2084
Stage III sporulation protein AD; Identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849.
 
  
 0.951
CPF_2083
Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.
 
  
 0.941
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.867
spoIIID
Stage III sporulation protein D; Identified by similarity to SP:P15281; match to protein family HMM TIGR02844.
  
   
 0.857
CPF_2475
Stage II sporulation protein R; Identified by similarity to SP:P39151; match to protein family HMM PF09551; match to protein family HMM TIGR02837.
  
  
 0.846
CPF_2068
Stage IV sporulation protein B; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
 
   
 0.843
spoIIIAH
Stage III sporulation protein AH.
  
  
 0.825
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (14%) [HD]