STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2126TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (365 aa)    
Predicted Functional Partners:
CPF_2124
Hypothetical protein; Identified by glimmer; putative.
 
     0.906
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
    0.775
CPF_1699
Conserved hypothetical protein.
  
 
   0.771
CPF_2497
Identified by match to protein family HMM PF05866.
  
     0.771
CPF_2125
Glycosyl transferase, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
  
    0.758
CPF_1559
Putative adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.750
CPF_2176
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.749
CPF_2384
Conserved hypothetical protein; Identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327.
  
     0.727
CPF_2939
Putative DNA replication protein DnaD; Identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446.
 
    0.714
CPF_1558
Conserved hypothetical protein; Identified by similarity to PIR:A96980.
  
     0.713
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.